These are chat archives for dereneaton/ipyrad
rad_example_barcodes.txt. I'm updating the docs now.
@isaacovercast, New feature implemented in 0.2.6. I'm planning to deprecate the
excludes parameter. Instead, subsampling taxa will be done during branching. As an example, you can subsample a data set by listing the names you want to include after a branch name:
ipyrad -p params-data1.txt -b data2 1A_0 1B_0 1C_0
This seems like a much cleaner way of doing things. It reports back names that do not match, but we could add other user-friendliness to it, like a way of listing names to exclude, instead of just those to include...
ipyrad -m newAssembly data1 data2 data3