These are chat archives for dereneaton/ipyrad

1st
Jun 2016
Robin Sleith
@R0cknRobin_twitter
Jun 01 2016 20:25
Ok, tried again and got a new error: Step5: Consensus base calling
Caught unknown exception - Unknown format code 'f' for object of type 'unicode' Traceback (most recent call last):
File "/home/rsleith/miniconda2/bin/ipyrad", line 9, in <module>
load_entry_point('ipyrad==0.2.10', 'console_scripts', 'ipyrad')()
File "/home/rsleith/miniconda2/lib/python2.7/site-packages/ipyrad/main.py", line 364, in main
data.run(steps=steps, force=args.force, preview=args.preview)
File "/home/rsleith/miniconda2/lib/python2.7/site-packages/ipyrad/core/assembly.py", line 1380, in run
self.step5(force=force)
File "/home/rsleith/miniconda2/lib/python2.7/site-packages/ipyrad/core/assembly.py", line 1304, in step5
self._clientwrapper(self._step5func, [samples, force], 45)
File "/home/rsleith/miniconda2/lib/python2.7/site-packages/ipyrad/core/assembly.py", line 837, in _clientwrapper
stepfunc(*args)
File "/home/rsleith/miniconda2/lib/python2.7/site-packages/ipyrad/core/assembly.py", line 1093, in _step5func
assemble.consens_se.run(self, samples, force, ipyclient)
File "/home/rsleith/miniconda2/lib/python2.7/site-packages/ipyrad/assemble/consens_se.py", line 700, in run
data.stats.hetero_est.mean(), data.stats.hetero_est.std()))
ValueError: Unknown format code 'f' for object of type 'unicode'