@dereneaton I have a quick question with regards to clusering if you can help? I have been experimenting with settings with the help of @isaacovercast. However, I am not sure I am getting many hi depth clusters. I am assuming hi depth clusters are clusters with a good depth of over lapping reads?
samples reads merged cluster total clusters hidepth
sample 1 1781547 1379047 13515
sample 2 1863936 1429270 14587
sample 3 1939299 1467583 15458
sample 4 1296480 1019987 8739