These are chat archives for dereneaton/ipyrad

1st
Jul 2016
danielyao12
@danielyao12
Jul 01 2016 01:37
@dereneaton Thank you! I will update and try some new data.
Katie Lyons
@ladykiyenz
Jul 01 2016 20:39
Hi! I'm running the empirical data tutorial on HPC and am getting an error running steps 2-7. I can run one by one to clarify this issue.
File "/home1/02916/kl23833/miniconda2/lib/python2.7/site-packages/ipyrad/assemble/cluster_across.py", line 523, in multicat
with lbview.temp_flags(after=cleaning[last_sample]): KeyError 0
Deren Eaton
@dereneaton
Jul 01 2016 20:40
@ladykiyenz Are you running on a mac or linux?
oh, @isaacovercast saw this error yesterday. Did you find a fix for this yet?
Katie Lyons
@ladykiyenz
Jul 01 2016 20:50
Linux, and no I haven't figured it out!
using the same call as from the tutorial, but with the MPI flag. same error without the flag.
Deren Eaton
@dereneaton
Jul 01 2016 20:52
oh, sorry I was asking isaac about figuring it out.
I found a fix, I'll push it in just a minute. Running a test now.
Katie Lyons
@ladykiyenz
Jul 01 2016 20:53
Ha, of course.
Wow, thanks!
Deren Eaton
@dereneaton
Jul 01 2016 21:05
OK, try the new version 0.3.16 which is now up on conda for linux. You can upgrade by typing:
conda upgrade -c ipyrad ipyrad
Katie Lyons
@ladykiyenz
Jul 01 2016 21:05
awesome, thanks.