These are chat archives for dereneaton/ipyrad
@Cycadales Hey, sorry that HPC script needs to be updated. It is much simpler than that to run ipyrad on HPC now. Simply use the MPI flag when you run the command line and tell it how many cores you have available. e.g.,
ipyrad -p params-iptest.txt -s 123 -c 64 --MPI
Depending on your HPC system it might be necessary to source your .bashrc file again (remember this was a step during installation) so that your session can find your conda directory. If it wasn't sourced you would get an error that looks something like 'ipyrad: command not found'. If so, just add this command before ipyrad.