These are chat archives for dereneaton/ipyrad

18th
Aug 2016
Edgardo M. Ortiz
@edgardomortiz_twitter
Aug 18 2016 02:27
Hello @dereneaton and @isaacovercast: I reduced the final number of samples in a locus to 2, however the in the .loci file the minimum number of samples is 4, could you confirm this behavior?
Isaac Overcast
@isaacovercast
Aug 18 2016 03:04
Hi @edgardomortiz_twitter , I will check it out. Will you please email me your params file? iovercast@gc.cuny.edu
Deren Eaton
@dereneaton
Aug 18 2016 03:36
@edgardomortiz_twitter , I think it will work if you correspondingly lower the trim_overhang parameter from 4 to 2. I have plans to change the functionality of trim_overhang sometime soon so it is less redundant with min_samples_locus. Let me know if that works.
Edgardo M. Ortiz
@edgardomortiz_twitter
Aug 18 2016 04:55
thanks @dereneaton, that worked!
Isaac Overcast
@isaacovercast
Aug 18 2016 18:10
v.0.3.30 now available on conda: Fix for intermittent error causing some samples to fail step 4.