Hi Deren/Isaac, in my outfiles, the .loci file is normal, but others ar almost empty. such as .snp.phy, I can see the head of the file including number of samples and number of snps, but the following SNP sequences is gone. Any suggestion? Thanks
Hi Deren et al., I've got some data encoded in phred64, and although I've specified this one line 10 of the params file, all samples are failing the derep_concat_split portion of Step 3 as vsearch returns: "Fatal error: FASTQ quality value above qmax."