These are chat archives for dereneaton/ipyrad

7th
Sep 2016
Cycadales
@Cycadales
Sep 07 2016 11:28

Quick questions guys has anyone had issue where during step six where it is building database finishes before its at 100% ```Step 6: Clustering across 74 samples at 0.8 similarity
[####################] 100% concat/shuffle input | 0:00:31
[####################] 100% clustering across | 3:11:25
[####################] 100% building clusters | 0:02:19
[####################] 100% aligning clusters | 1:25:36
[####################] 100% indexing clusters | 18:04:54
[################## ] 90% building database | 17:56:04

Step 7: Filter and write output files for 74 Samples
[####################] 100% filtering loci | 0:01:07
[####################] 100% building loci/stats | 0:00:13
[####################] 100% building vcf file | 0:06:14
[####################] 100% writing outfiles | 0:01:49
Outfiles written to: ~/James_C/Ccalcicola/ccal/ccal_outfiles ```

I do not seem to get any errors but above it reported 90% and later it reported 72% but gave no errors.