These are chat archives for dereneaton/ipyrad

15th
Sep 2016
Deren Eaton
@dereneaton
Sep 15 2016 22:56
@all v.0.3.42 has now been released:
New features:
  • big speed improvements to steps 3 and 6
  • threaded clustering/mapping within samples
  • better error reporting
  • better memory handling in step3
    Bug fixes:
  • fixed problem with branching and changing mindepth_majrule
  • fix to final indel filter (it was over-counting/filtering indels)
  • fix to alignment splitting bug for pairgbs data where pairs were not being split and aligned separately for reverse complement matched pairs.
  • fix to progress bar counter sometimes not finishing in step 6.
@SheaML I think the new version will fix your problem, and run much faster.