These are chat archives for dereneaton/ipyrad

24th
Sep 2016
R2C2.lab
@R2C2_Lab_twitter
Sep 24 2016 08:51
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This message was deleted
@R2C2_Lab_twitter
Hi @dereneaton and @isaacovercast , I'm having problems in the very first step of ipyrad because my samples are already demultiplexed and when executing the -s 1 step zero new Samples were created Error: Steps >1 (2) requested but no current assembly found
Edgardo M. Ortiz
@edgardomortiz
Sep 24 2016 14:37
Could you post your params file?
Edgardo M. Ortiz
@edgardomortiz
Sep 24 2016 14:53
Well I can think of 2 things that may be happening. In parameter [4] you have to specify the path and the set of files to select (./folder/*.gz) and the files in that folder must be named with R1 for forward reads and R2 for reverse reads, without the second underscore my samples were not recognized by ipyrad
Edgardo M. Ortiz
@edgardomortiz
Sep 24 2016 15:06
I intended to type _R1_ and _R2_ but it just came italicized, sorry