These are chat archives for dereneaton/ipyrad
NS500799:97:HTV37BGXX:4:11401:6904:1031 1:N:0:TAATGCGC+AGGCTATAdoes not match
NS500799:97:HTV37BGXX:2:11101:16232:1067 1:N:0:TAATGCGC+AGGCTATAin the read2 file. It may be something very simple. Maybe remake the files in trimmomatic. Or you could skip trimmomatic and use the unfiltered data in ipyrad. To make sure it works you could start by running just that one sample on your laptop, or anywhere that you can get fast access to a compute node.