These are chat archives for dereneaton/ipyrad
@dereneaton @isaacovercast Hi I did an analysis with a previous version (0.3.42) with all my individuals. Today I updated ipyrad to 0.4.7 and I wanted to create outfiles for a subset of individuals
So I did ipyrad -p params_090_60.txt -b subdata samples_to_keep.txt
and then ran ipyrad -p params-subdata.txt -s 7
but I got the error
Step 7: Filter and write output files for 109 Samples
Encountered an unexpected error (see ./ipyrad_log.txt)
Error message is below -------------------------------
invalid index to scalar variable.
What does it mean? BTW ipyrad_log.txt is empty!
Thanks for the help
2016-11-03 10:39:29,984 pid=31575 [jointestimate.py] ERROR Sample DIP-Dmeye failed with error IndexError(index 28449 is out of bounds for axis 0 with size 28449)
git pullto update it, and then
pip install -e .to install the local version of ipyrad and your working version. This will take priority over the conda version.
ipcluster stopif you happen to have ipcluster running now.
ipcluster startto start it again after you update ipyrad
2016-11-03 16:35:34,484 pid=26317 [jointestimate.py] ERROR Sample PIO-Dcine failed with error IndexError(index 123 is out of bounds for axis 0 with size 123)
mindepth_majrule=6, I branched with
mindepth_majrule=4and step 4 ended normally without errors