These are chat archives for dereneaton/ipyrad
@isaacovercast step 7 worked with the new version, but without the option for vcf file.
I've tried it using the -c 1 flag, in a computer node with 512GB and still got the error when writing the vcf file. The ipyrad_log.txt is:
2016-11-18 10:05:31,053 pid=71774 [write_outfiles.py] ERROR error in vcf build chunk 0: MemoryError()
It looks like the assembly.py worked now, but it failed when writing the output.