These are chat archives for dereneaton/ipyrad

29th
Nov 2016
James Clugston
@Cycadales_twitter
Nov 29 2016 19:18
@R2C2_Lab_twitter @isaacovercast Yes I have found that with 150 PE ezRAD data the clustering steps takes forever. I currently have an analysis running at 52% for 7 days on an 80 core HPC with 448 ram...I used Trimmomatic and used similar settings to what you have used for quality trimming your reads. I would also recommend using a sliding window setting too this can help. But the clustering steps does take a long time.