These are chat archives for dereneaton/ipyrad

30th
Nov 2016
R2C2.lab
@R2C2_Lab_twitter
Nov 30 2016 15:03
Hi @Cycadales_twitter , what do you mean by using a sliding window setting?
R2C2.lab
@R2C2_Lab_twitter
Nov 30 2016 15:11
And another question: which of the output files can be used to estimate a ML tree in RaxML? Is it the .phy file?
Edgardo M. Ortiz
@edgardomortiz
Nov 30 2016 15:34
@R2C2_Lab_twitter I would recommend using the .snps.phy and enabling the ascertainment bias correction in RAxML
R2C2.lab
@R2C2_Lab_twitter
Nov 30 2016 15:35
@edgardomortiz Many thanks!