These are chat archives for dereneaton/ipyrad

1st
Dec 2016
Edgardo M. Ortiz
@edgardomortiz
Dec 01 2016 20:32
@R2C2_Lab_twitter I think that file will need a little cleanup for ascertainment bias in RAxML, it must contain PIS only
Katherine Silliman
@ksil91
Dec 01 2016 21:00
I was running Step 3 with denovo+reference with a lot of samples, and finished the "chunking" step, but then my cluster job ran out of walltime (D'oh!). Is there a way to restart Step 3 at the aligning phase, without having to redo the time-intensive mapping?