These are chat archives for dereneaton/ipyrad

5th
Dec 2016
Alexander McKelvy
@SnakeEvolution_twitter
Dec 05 2016 22:56 UTC
Hey guys - quick question about the VCF file output from iPyrad. The program sNMF reads the vcf ipyrad creates, but chokes when it hits certain loci, giving error messages such as "Error: SNP 122, individual 4, not a 0/1: '4','4'." and "SNP 496, individual 11, not a 0/1: '4','4'". I don't recall this happening with pyrad vcfs. Do you happen to have an insight on these characters? Did something change in vcf formatting?