These are chat archives for dereneaton/ipyrad

6th
Dec 2016
Deren Eaton
@dereneaton
Dec 06 2016 00:08
Hey @SnakeEvolution_twitter, did you create the VCF using a very recent version of ipyrad? We fixed a bug (or at least thought we did) recently that should have fixed the problem of '4's in the vcf file.
Alexander McKelvy
@SnakeEvolution_twitter
Dec 06 2016 01:53
I will update and try again with the latest version. Was the bug in the file output step only or do I need to back up further?
I was using ipyrad: 0.4.4-0
Deren Eaton
@dereneaton
Dec 06 2016 19:16
@SnakeEvolution_twitter it was only in the file output step (7), so just rerun that step.
Alexander McKelvy
@SnakeEvolution_twitter
Dec 06 2016 20:24
When I try to go back and redo just step 7 I get "could not broadcast input array from shape (9130,202,2) into shape (9130,192,2)
"
Alexander McKelvy
@SnakeEvolution_twitter
Dec 06 2016 22:36
Dropped back to step 4, reran it and step 7 works, but importing the vcf still gives the "4's" error - that being said, there is now a .geno file in the outfiles from ipyrad that does work natively in sNMF. Thanks for that!