These are chat archives for dereneaton/ipyrad

22nd
Dec 2016
James Clugston
@Cycadales_twitter
Dec 22 2016 17:41
@isaacovercast @dereneaton Hi guys quick question. I am having some problems with the amount of missing data in the structure file. Do you have any ideas how to filter out missing data from ipyrad outputs?
Deren Eaton
@dereneaton
Dec 22 2016 18:14

@/all Major update v.0.5.14 is now available.
New features:

  • Huge reduction in disk space usage (lots of intermediate files are now removed)
  • Populations file now supported (see docs for usage [here] (http://ipyrad.readthedocs.io/parameters.html#pop-assign-file))
  • Major reduction of memory usage in step 7 for large-scale assemblies
  • Slight improvement to speed of cluster aligning in step3
  • Added more notes on MPI usage to documentation.
  • Nexus output format supported

Bug fixes:

  • Avoid 'too many open files error' on API.
Deren Eaton
@dereneaton
Dec 22 2016 19:34
v.0.5.15 is now available:
Bug fixes for two problems that could pop up in step7:
  • bug fix to "Chunk shape must not be greater than data shape in any dimension".
  • fix for vcf build chunk error "all input arrays must have the same number of dimensions".