These are chat archives for dereneaton/ipyrad

30th
Dec 2016
congliu0514
@congliu0514
Dec 30 2016 02:02
@isaacovercast @dereneaton I found one problem in the vcf file: some allele value in GT is 3, e.g. 0/3, which indicate the third allele list in ALT. However, there are only two allele list in ALT. Do you guys know the reason? Thanks a lot !
1834 41 . T G,A 13 PASS NS=17;DP=890 GT:DP:CATG 0/3:29:6,0,23,0
Deren Eaton
@dereneaton
Dec 30 2016 16:14
@congliu0514 Thanks. I'll look into it, I have an idea what might have caused this problem.