These are chat archives for dereneaton/ipyrad

12th
Jan 2017
miqrau
@miqrau_twitter
Jan 12 2017 02:20
@dereneaton , @isaacovercast , there is a verbose mode available? I am getting stuck with the step 2 from the example. I guess it is for a software conflict since it works on my local computer but not in the cluster. No error displayed, just the progress bar stuck 0%.
Isaac Overcast
@isaacovercast
Jan 12 2017 02:21
@miqrau_twitter You can add the -d flag to the ipyrad command. This will crank up the debug output that's written to ipyrad_log.txt.
miqrau
@miqrau_twitter
Jan 12 2017 02:32
thanks @isaacovercast. "2017-01-12 11:27:16,223 pid=6726 [load.py] WARNING skipping: no svd results present in old assembly" , how can I solve it?
Isaac Overcast
@isaacovercast
Jan 12 2017 02:33
It shouldn't be a warning. It's just informing you that you have not run tetrad on your assembly yet. It's totally not a problem.
miqrau
@miqrau_twitter
Jan 12 2017 08:31
thanks isaac, solved. It was a conflict with a previous python package installed. Removing it from ~/.local/lib/python2.7/site-packages solved the problem.