These are chat archives for dereneaton/ipyrad

21st
Feb 2017
Emily Warschefsky
@ewarschefsky_twitter
Feb 21 2017 02:02

hey @dereneaton and @isaacovercast : I have 1 lane of PE ddRAD and 2 lanes of SE ddRAD that I want to merge together - here is what I tried: run the 1 PE ddRAD lane through from steps 1-5 as pairddrad, run the 2 SE ddrad lanes through from steps 1-5 as ddrad, merge the PE & 2SE, run steps 6-7 on all. I tried it this way and got the following error

[cluster_across.py]    INFO     maxlen inside build is 419
[cluster_across.py]    INFO     inarr shape (280, 2605, 419)
[assembly.py]    ERROR

I'm not sure if it has anything to do with the combination of SE & PE or not, but I haven't seen this error before...

Deren Eaton
@dereneaton
Feb 21 2017 19:51
@ewarschefsky_twitter Hmm, I'll look into it. It seems like the way you did it should work, in theory.
Isaac Overcast
@isaacovercast
Feb 21 2017 21:18
New version v.0.6.5: Fixes crashing bugs in step 4 and step 3 with SE reference assemblies.