These are chat archives for dereneaton/ipyrad
sorted_fastq_path, and set
filter_adaptersto 0. Your Samples will be named according to their filenames. Then run steps 1 and 2. The first step will simply load in the data files, and step 2 will not trim your data any further, but will check it for
max_low_qual_bases, and format it properly to run step 3 next.