These are chat archives for dereneaton/ipyrad

23rd
Apr 2017
Isaac Overcast
@isaacovercast
Apr 23 2017 08:16
@congliu0514 This is a common error when running on HPC. Sometimes the ipcluster doesn't fire up fast enough and ipyrad exits with the message you found. The simplest thing is just to try to run it again. Most often this is an intermittent error and running it again will actually work. If this doesn't fix it you can try running ipcluster by hand like this: http://ipyrad.readthedocs.io/HPC_script.html?highlight=hpc#optional-controlling-ipcluster-by-hand
congliu0514
@congliu0514
Apr 23 2017 10:24
@isaacovercast Thanks a lot for your reply. I reran ipyrad and it was fine!