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Interactive assembly and analysis of RAD-seq data sets
May 01 2017 14:19
Yes, I'm using a reference method. The problem occurs in reference method and denovo+reference mothod of which step 6 are very slowly. For assemble by only denovo method, step 6 is fast.
May 01 2017 14:21
Aha, ok, that helps. We haven't tried to optimize that specific part with ref for speed yet. We should be able to make it just as fast as denovo.