These are chat archives for dereneaton/ipyrad

May 2017
Bohao Fang
May 01 2017 14:19
@dereneaton Yes, I'm using a reference method. The problem occurs in reference method and denovo+reference mothod of which step 6 are very slowly. For assemble by only denovo method, step 6 is fast.
Deren Eaton
May 01 2017 14:21
Aha, ok, that helps. We haven't tried to optimize that specific part with ref for speed yet. We should be able to make it just as fast as denovo.