These are chat archives for dereneaton/ipyrad

12th
May 2017
Isaac Overcast
@isaacovercast
May 12 2017 18:56
@LinaValencia85 For PE reference mapping R1 and R2 are mapped simultaneously, then they are merged after mapping but prior to alignment.
@LinaValencia85 So if you run the samples through denovo you see lots of merged PE clusters, but for reference mapped you don't see any or see very few? This is unusual, i'll have to look into it more.
Isaac Overcast
@isaacovercast
May 12 2017 20:00
NB v.0.6.20: If you are doing reference mapping and you updated to 0.6.20 there is a bug in the code so i recommend returning to 0.6.19 for the mean time.
Roll back like this: conda install --force -c ipyrad ipyrad=0.6.19