These are chat archives for dereneaton/ipyrad

20th
May 2017
Isaac Overcast
@isaacovercast
May 20 2017 20:01
@LinaValencia85 new version is up, give it a try and let me know how it goes.
Israelornis
@Israelornis
May 20 2017 20:06
2017-05-20 19:54:36,506 pid=290 [rawedit.py] ERROR error in run_cutadapt(): IPyradError( error in cutadapt --minimum-length 95 --max-n 5 --trim-n --output /data/piranga_edits/Piranga_hepatica_KU_4970_RAD.trimmedR1.fastq.gz /data/Piranga/Piranga_hepatica_KU_4970_RAD.fastq
This is cutadapt 1.12 with Python 2.7.13
Command line parameters: --minimum-length 95 --max-n 5 --trim-n --output /data/piranga_edits/Piranga_hepatica_KU_4970_RAD.trimmedR1.fastq.gz /data/Piranga/Piranga_hepatica_KU_4970_RAD.fastq
Trimming 0 adapters with at most 10.0% errors in single-end mode ...
cutadapt: error: Line 1 in FASTQ file is expected to start with '@', but found '\n'
)
@dereneaton I hava a problem in my run during step 2, marking this error: 2017-05-20 19:54:36,506 pid=290 [rawedit.py] ERROR error in run_cutadapt(): IPyradError( error in cutadapt --minimum-length 95 --max-n 5 --trim-n --output /data/piranga_edits/Piranga_hepatica_KU_4970_RAD.trimmedR1.fastq.gz /data/Piranga/Piranga_hepatica_KU_4970_RAD.fastq
This is cutadapt 1.12 with Python 2.7.13
Command line parameters: --minimum-length 95 --max-n 5 --trim-n --output /data/piranga_edits/Piranga_hepatica_KU_4970_RAD.trimmedR1.fastq.gz /data/Piranga/Piranga_hepatica_KU_4970_RAD.fastq
Trimming 0 adapters with at most 10.0% errors in single-end mode ...
cutadapt: error: Line 1 in FASTQ file is expected to start with '@', but found '\n'
)