These are chat archives for dereneaton/ipyrad

28th
May 2017
Gemma Clucas
@DrGemClucas_twitter
May 28 2017 23:26
@isaacovercast Awesome, thanks! If I wanted to figure out the exact mapping success, would I have to do that externally with bwa mem? Also, how are you throwing out reads that multi-map? Do you use the MD flag?