These are chat archives for dereneaton/ipyrad

2nd
Jun 2017
cwessinger
@cwessinger
Jun 02 2017 14:00 UTC
Anyone familiar with this error in step 3?: ERROR NameError(global name 'fullcomp' is not defined)
2017-06-02 01:42:45,508 pid=122195 [assembly.py] ERROR IPyradWarningExit: NameError(global name 'fullcomp' is not defined).
cwessinger
@cwessinger
Jun 02 2017 14:10 UTC
I'm sorry, this is during step6, during the 'building clusters' stage. (Glad I made it that far!)
mav1234
@mav1234
Jun 02 2017 18:49 UTC
Hello all! I am trying to give ipyrad a try on some preliminary data that has already been demultiplexed. So, I'm picking up in step 2... Trying to run the program over an HPC and I'm receiving the error ValueError: No JSON object could be decoded. Can provide the submission script or what not as needed.
Anyone have any idea what might cause that error?
cwessinger
@cwessinger
Jun 02 2017 19:59 UTC
@mav1234 You still need to run step1, which establishes a JSON object and reads in your demultiplexed files.
mav1234
@mav1234
Jun 02 2017 20:00 UTC
ah okay, thanks!
mav1234
@mav1234
Jun 02 2017 20:06 UTC
I am still getting the error with step 1 included
I'm going to run through the tutorial on simulated data from the top and see how it goes.