These are chat archives for dereneaton/ipyrad

Jun 2017
Isaac Overcast
Jun 15 2017 16:25
@rtm79 I've seen that before. There is a file in your working directory that is called <your_assembly_name>.json. This error happens when this .json file gets corrupted or moved or renamed. If you moved or renamed this file then you should put it back. If it got corrupted somehow then you'll have to just start over from step 1.
Deren Eaton
Jun 15 2017 16:27
@rtm79 One way JSON files can become corrupted is if you run out of disk space while the file is being modified. If you're working on a HPC cluster make sure you are working in a scratch space, or somewhere where you have a lot of available disk space.