These are chat archives for dereneaton/ipyrad
mbsumcommand, so there must be a problem earlier as well, which is what we really want to figure out. I haven't spent much time yet on writing stuff into the ipa.bucky code to catch errors and report them cleanly. Try running your data using the single
.run(ipyclient=ipyclient, force=True)command, which calls each of the other three subcommands within it to run mrbayes, mbsum, and bucky in order. I hope we can get it working for you soon.
buckywere installed? They should be callable from the command line if you installed them from the
ipyradconda channel with
conda install bucky -c ipyrad
ipclusterinstance, which is a tool ipyrad uses to connect many cores on a cluster.
--profile=ipyradas the default profile, but instead let you set the name to whatever you want.
ipcluster start --n=24 --profile=watwat sleep 30 ipyrad -p params.txt --ipcluster watwat
--daemonizeit, or run it in a separate terminal. It is essentially running a server, so you need to keep it running as long as you wish to connect to it. Normally this is what ipyrad does behind the scenes, it starts it up, runs a bunch of work, and then shuts it down.
--daemonizeflag if using the CLI.