These are chat archives for dereneaton/ipyrad
ipyparallel tutorial__) that doesn't go anywhere; is there a separate tutorial for ipyparallel?
Ncan mean it is unknown either because (1) the locus is missing, or (2) the base call is statistically ambiguous; and a
-can mean either (1) there is data for the locus and this site is an indel, or (2) this is in the flanking region of a locus with data of variable lengths among samples...
-would only mean that it is thought to be an indel, and
Nalways means unknown. That seems reasonable.
ipyrad -p params-Carm2.txt -c 64 -t 32 -s 3 -r >& Carm2 &