These are chat archives for dereneaton/ipyrad

8th
Sep 2017
Kevin
@kevinmneal
Sep 08 2017 22:39
Hi @dereneaton , I was wondering why we use the same clust_threshold parameter for both steps 3 and 6, rather than a unique threshold for both? Seems like you'd want a high threshold for within-sample and a lower one for between-sample, especially if you have multiple species or genera.