These are chat archives for dereneaton/ipyrad
@isaacovercast "SplitsTree is capable of reading phylip files" -> I tried to load the phylip files into splitsTree but it did not work: "Import failed: unknown format or error in file (e.g. illegal characters or multiple occurrences of same taxon name.) Nexusfile from same dataset is working.
@isaacovercast @dereneaton OK, I removed the profile argument, submitted the batch job to start the ipcluster, and am now trying to connect to that cluster and print how many cores are available, as described in http://ipyrad.readthedocs.io/HPC_Tunnel.html. I did
import ipyrad as ip import ipyparallel as ipp ## connect to the client ipyclient = ipp.Client ## print how many engines are connected print(len(ipyclient), 'cores')
TypeErrorTraceback (most recent call last) <ipython-input-14-75d53df3a4f7> in <module>() 6 7 ## print how many engines are connected ----> 8 print(len(ipyclient), 'cores') 9 10 ## or, use ipyrad to print cluster info TypeError: object of type 'MetaHasTraits' has no len()