These are chat archives for dereneaton/ipyrad

Sep 2017
Sep 27 2017 14:57
Hi Deren,
I have a question about assigning reads to samples using barcodes. Does iPyrad actually take the quality of the base into account while doing this? Or should I quality filter my reads for the 5' end also, and if yes, which program would you recommend for this? I am using cutadapt at the moment. Thanks for your help. -Remco