These are chat archives for dereneaton/ipyrad
Hi @isaacovercast, I think my disk space should be sufficient. I am running ipyrad on a compute node of our University HPC. Below is the tail of by .o file after running one of the scripts from step 3 through to 6.
Requested resource limits are neednodes=1:ppn=16,nodes=1:ppn=16,pmem=4000mb,walltime=48:00:00 Used resource limits are cput=00:13:07,mem=285480kb,vmem=1311520kb,walltime=03:05:44
Not sure what is happening but it seems to work fine when I run each branch one at a time
.consens.gzfiles from the _consens directory for each of the runs.
<assemblyName>_acrossoutput folder, in which there should be a file called
assemblyName.clust.hdf5. Then in Python REPL:
import h5py h5py.File("assemblyName.clust.hdf5", 'r')