These are chat archives for dereneaton/ipyrad

13th
Oct 2017
Jeff A. Johnson
@jebberson
Oct 13 2017 03:51
Has anyone seen the following error at the end of step 5 (census calling): IOError(Unable to create file (File locking disabled on this file system (use hdf5_use_file_locking environment variable to override), errno = 38, error message = 'function not implemented'))
This is a new install on an HPC cluster (linux). I reinstalled hdf5, resulting in no change. Unsure how to "use hdf5_use_locking environment variable" as stated.
Isaac Overcast
@isaacovercast
Oct 13 2017 18:29
@jebberson Looks like an issue with the cluster filesystem configuration: h5py/h5py#673 && http://hdf-forum.184993.n3.nabble.com/HDF5-1-10-0-and-flock-td4028856.html
I've never seen that before, you might have to talk to your cluster admins.