These are chat archives for dereneaton/ipyrad

Oct 2017
Todd McLay
Oct 17 2017 00:05
Hi @dereneaton and @isaacovercast , the older version of pyRAD used to output a file with all the loci that weren't included in the final dataset (removed.loci I think it was called). Is it possible to incorporate this function into ipyrad at all? I found that file useful to understand why loci were being filtered out due to duplicates, indels or SNPs. Cheers for all the effort.
Isaac Overcast
Oct 17 2017 12:27
@toddmclay_twitter I created a ticket #273. No promises for when it'll be implemented, but it's a fine idea.