These are chat archives for dereneaton/ipyrad

11th
Nov 2017
tommydevitt
@tommydevitt
Nov 11 2017 20:28

Hi @dereneaton and @isaacovercast I recently uninstalled and reinstalled conda and ipyrad, and am now having trouble getting ipyrad to work. Says "The 'jupyter' distribution was not found and is required by ipyrad". I did

ipyrad -p params-BPP_Sept3.txt -b params-BPP_Sept3-min36.txt

and got

Traceback (most recent call last):
  File "/home1/02745/tdevitt/miniconda2/bin/ipyrad", line 6, in <module>
    from pkg_resources import load_entry_point
  File "/home1/02745/tdevitt/miniconda2/lib/python2.7/site-packages/pkg_resources/__init__.py", line 3138, in <module>
    @_call_aside
  File "/home1/02745/tdevitt/miniconda2/lib/python2.7/site-packages/pkg_resources/__init__.py", line 3122, in _call_aside
    f(*args, **kwargs)
  File "/home1/02745/tdevitt/miniconda2/lib/python2.7/site-packages/pkg_resources/__init__.py", line 3151, in _initialize_master_working_set
    working_set = WorkingSet._build_master()
  File "/home1/02745/tdevitt/miniconda2/lib/python2.7/site-packages/pkg_resources/__init__.py", line 664, in _build_master
    ws.require(__requires__)
  File "/home1/02745/tdevitt/miniconda2/lib/python2.7/site-packages/pkg_resources/__init__.py", line 981, in require
    needed = self.resolve(parse_requirements(requirements))
  File "/home1/02745/tdevitt/miniconda2/lib/python2.7/site-packages/pkg_resources/__init__.py", line 867, in resolve
    raise DistributionNotFound(req, requirers)
pkg_resources.DistributionNotFound: The 'jupyter' distribution was not found and is required by ipyrad

Any advice?

tommydevitt
@tommydevitt
Nov 11 2017 20:52
Nevermind, found isaac's post here https://groups.google.com/forum/#!topic/pyrad-users/GswQbos-blU and did 'pip install jupyter' which fixed it. 'conda install jupyter' did not.