These are chat archives for dereneaton/ipyrad
Warning: encountered an error in the alleles file format. This is a bug that was fixed in v.0.7.2. Rerun step 7 on this data set to ensure that the alleles file is properly formatted.
@dereneaton @isaacovercast First, thanks so much for your help getting bpp running! I used Isaac's instructions about a week ago:
git clone https://github.com/dereneaton/ipyrad.git conda-build ipyrad/conda.recipe/bpp/ conda install --use-local bpp
The analysis is still running, whereas before it ended almost instantly. There are also MCMC files now in the analysis folder, unlike before. So, it's taking some time, but seems to be working?
However, I now seem to have a similar problem getting STRUCTURE to work. It gave a nearly identical error:
("structure: /lib64/libc.so.6: version `GLIBC_2.14' not found (required by structure)\n", None)
So, second: how do I fix it this time? I'm guessing it's something similar, but I am pretty ignorant on what these commands are actually doing, and so I was wary of just adjusting them without checking first. For example, it looks like last time git clone made a separate copy of ipyrad near my original copy, and I'm not sure why that was needed, or whether I need to do it again. I'd appreciate it if you have time to give more instructions.
structurein a terminal to call the binary.
conda-build ipyrad/conda.recipe/structure/a try and it responded with an error including
Error: HTTP 404 NOT FOUND for url <http://pritchardlab.stanford.edu/structure_software/release_versions/v2.3.4/structure_kernel_source.tar.gz>