These are chat archives for dereneaton/ipyrad

Dec 2017
Isaac Overcast
Dec 02 2017 19:04
@DylanHCohen_twitter I don't know whether .phy output files from pyrad and ipyrad differ, but if i had to guess I'd say they probably will differ slightly in content, but not in form. Unlinked snps in phy format are written out by ipyrad as <assembly_name>.u.snps.phy
@ChaoShenzjs Yes, running steps 1-4 on smaller pools and then merging will behave identically to running the whole dataset concurrently as one large assembly.