These are chat archives for dereneaton/ipyrad
Hi @isaacovercast and @dereneaton,
I have the same problem some people have with the ABBA test.
The notebook works fine with the example data.
My own dataset includes 52-97 samples and around 6000 final loci with minCov around 60%.
When I start the notebook with my data and generate_tests_from_tree depending on
the contrains and samples I assign to Px I either get 0 or e.g. 74 or 5000 tests generated from tree. It will crash after a short period of time “0% calculating D-stats | 0:00:08 |” with the error: 0: ValueError(cannot assign slice from input of different size). I think sometimes I also get the error: 0: IndexError(list index out of range). What is wrong with my locifile?
This is how I setup the dicts:
ls -lon the _fastqs directory? Can you rerun ipyrad with the
-dflag and show me the last 10-20 lines of the ipyrad_log.txt file once it stops doing anything?
conda install anaconda-client
git clone https://github.com/dereneaton/ipyrad.git conda-build ipyrad/conda.recipe/bpp/ conda install --use-local bpp