These are chat archives for dereneaton/ipyrad

1st
Feb 2018
Nitish Narula
@nitishnarula
Feb 01 2018 13:34

@isaacovercast Regarding the ipyrad run that I restarted at step 6. I was just checking the slurm logs and saw this:

  Step 6: Clustering at 0.85 similarity across 1190 samples
  [####################] 100%  concat/shuffle input  | 0:12:09  
  [#                   ]   8%  clustering across     | 20 days, 13:25:18  
  [######              ]  33%  building clusters     | 8:43:11

Is this normal? I am not sure why the clustering substep would only got to 8% and then move on to the next?

Isaac Overcast
@isaacovercast
Feb 01 2018 15:15
@nitishnarula The progress bars often only approximate reality, so I wouldn't be too concerned. Lets see how the results look, but I'm pretty sure it's just an HPC artifact.
Eaton Lab
@eaton-lab
Feb 01 2018 16:43
@nitishnarula yeah, I wouldn't worry. The 'building clusters' step wouldn't be working if the clustering had not finished properly.