These are chat archives for dereneaton/ipyrad
Stale file handleerror seems to be caused by a directory being moved or removed and then trying to query a file in it. I'm not sure that it is related to any kernel issues, but more likely to some change in the filesystem mounting perhaps. If step 6 was being restarted from having stopped without finishing it tries to restart from the 'substep' part of step 6 that it was on, and so perhaps this is creating some error when looking for a temporary file... just dropping ideas here. If that was the problem you could try forcing a hard restart of step 6 by using the
-fflag. Upgrading is advised as well.
-fto try a clean run from the start would be something to try.
(' error in %s: %s', ['split', '-a', '4', '-l', '8000000', '-', '/home/ellavazquez/Giss/tmp-chunks-Chaeto_1/chunk1_0_'], 'split: /home/ellavazquez/Giss/tmp-chunks-Chaeto_1/chunk1_0_aacd: No space left on device\n'). I used some commands like
lsof | grep deletedto fix it but doesn't work. I am a new user, someone could help me? any idea? Thanks