These are chat archives for dereneaton/ipyrad

23rd
Feb 2018
Peter B. Pearman
@pbpearman
Feb 23 2018 17:00
@dereneaton About those scripts you mentioned, what is your preferred way for me to access them?
Isaac Overcast
@isaacovercast
Feb 23 2018 20:14
@toczydlowski The post-processing could be obscuring the real differences between ipyrad and stacks, so it's hard for me to say exactly what's going on. I can give you a general direction to think about though. In my experience stacks tends to oversplit, so if loci get oversplit they will fall below the 75% coverage cutoff.