These are chat archives for dereneaton/ipyrad

6th
Mar 2018
Gissella Pineda
@gissella_pineda_twitter
Mar 06 2018 04:26
Screen Shot 2018-03-05 at 10.21.52 PM.png
@isaacovercast thanks, i made that but I don't understand very good the information of ipyrad_log.txt
Glib Mazepa
@mazepago_twitter
Mar 06 2018 17:11
Hi @isaacovercast and @dereneaton , I have ran rather successfully the ipyrad on a R1 files and trying to make pairddrad to work, however the s3 crashes at this moment, any guess what could be the reason? Thanks! 2018-03-06 17:29:46,715 pid=56703 [util.py] DEBUG Entering merge_pairs()
2018-03-06 17:29:46,723 pid=56703 [util.py] DEBUG merge cmd: /home/gmazepa/miniconda2/lib/python2.7/site-packages/bin/vsearch-linux-x86_64 --fastq_mergepairs /scratch/beegfs/monthly/gmazepa/ipyrad_02_March/pairddrad_02_March_edits/tmpQplW8IR1.fastq --reverse /scratch/beegfs/monthly/gmazepa/ipyrad_02_March/pairddrad_02_March_edits/tmpr_rm3VR2.fastq --fastqout /scratch/beegfs/monthly/gmazepa/ipyrad_02_March/pairddrad_02_March_edits/tmpTWGl_8_merged.fastq --fastqout_notmerged_fwd /scratch/beegfs/monthly/gmazepa/ipyrad_02_March/pairddrad_02_March_edits/tmpmX5CKl_nonmergedR1.fastq --fastqout_notmerged_rev /scratch/beegfs/monthly/gmazepa/ipyrad_02_March/pairddrad_02_March_edits/tmpcv1Vzm_nonmergedR2.fastq --fasta_width 0 --fastq_minmergelen 35 --fastq_maxns 5 --fastq_minovlen 20 --fastq_maxdiffs 4 --label_suffix _m1 --fastq_qmax 1000 --threads 2 --fastq_allowmergestagger
2018-03-06 17:29:50,288 pid=56566 [assembly.py] INFO finished shutdown
2018-03-06 17:29:50,584 pid=56566 [init.py] INFO debugging turned off