These are chat archives for dereneaton/ipyrad

13th
Mar 2018
Isaac Overcast
@isaacovercast
Mar 13 2018 02:56
@mazepago_twitter If the _edits directory is 402GB and scratch is only 1.6T then you certainly could be hitting a disk space issue. Step 3 creates lots of intermediate files that are cleaned up after it finishes, but these files do consume quite a bit of space during the run of this step.
Also, you are definitely not the first to try running multiple branches at a time, so I will add something to the ipyrad docs to indicate this doesn't work, good idea.
Isaac Overcast
@isaacovercast
Mar 13 2018 03:06
@Ollie_W_White_twitter If you look in your assembly directory is there a directory like tmp-chunks-? Are you sure you have enough disk space on the box you're working on? This could be a disk space issue, since the first step will split the large input files into smaller files for parallel demux. If there's not enough space it could crash in this way.
This error results when the number of split files for R1 and R2 are not the same prior to demux processing, so it could be just running out of space for splitting. Can you send me the ipyrad_log.txt from the debug run?