These are chat archives for dereneaton/ipyrad

4th
Apr 2018
Rebecca Tarvin
@frogsicles_twitter
Apr 04 2018 15:03
@isaacovercast The notes in the params file are a bit confusing regarding the orientation of trimming: ## [25] [trim_reads]: Trim raw read edges (R1>, <R1, R2>, <R2) (see docs). If I read your notes correctly on the parameter page, to trim the first 5 bases of R1, the first 4 bases of R2, and the last 25 bases of R2, this parameter should be 5, 0, 4, -25 but that does not seem to correspond to (R1>, <R1, R2>, <R2)
Rebecca Tarvin
@frogsicles_twitter
Apr 04 2018 15:58
@frogsicles_twitter Actually I think I'm interpreting your > wrong - R1> means the beginning of the read?
Isaac Overcast
@isaacovercast
Apr 04 2018 17:54
@frogsicles_twitter Yes, that's right R1> means the beginning of R1.