These are chat archives for dereneaton/ipyrad

9th
Apr 2018
danielyao12
@danielyao12
Apr 09 2018 01:15
@isaacovercast Yes, I mean the "No such file or directory". I check permission of the folder and even change permission to full permission, but still got the same error. You can see in the screenshot. I got the same error when the folder permission was 'drwxrwxr-x', 'drwxr-xr-x' or 'drwxrwxrwx'.
image.png
argastaldi
@argastaldi
Apr 09 2018 02:06
@isaacovercast I am running 0.7.23. I don't think I did anything unusual!
Nitish Narula
@nitishnarula
Apr 09 2018 14:09
@isaacovercast Thanks! I had actually set the memory to be 8GB per core, and the total memory was up to the limit allowed on the cluster. It seems our dataset might be too large for the memory limits.
Isaac Overcast
@isaacovercast
Apr 09 2018 17:48
@danielyao12 Ok, so it's not a permission issue, it's silently failing and the directory error is just a downstream result. Can you try vdb-config -p? perhaps sratools isn't installed right?
Isaac Overcast
@isaacovercast
Apr 09 2018 17:53
@argastaldi How many samples do you have? What kind of data? Can you email me the params file you're using?