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Interactive assembly and analysis of RAD-seq data sets
May 10 2018 15:47 UTC
Yes 'CGG' is correct.
Are you doing 'reference' or denovo+reference?
Are you sure any reads are actually mapping to the reference? Also, if you are doing reference only be aware of this little bug right now:
May 10 2018 18:27 UTC
I have the most recent version v0.7.24 and there don't appear to be any files produced other than the log file is appended each time I try a run.
May 10 2018 18:34 UTC
I created a new params file and ran with the -f param and it seems to work now. Just need to get the .fq file names formatted properly. Thanks!